From November 2020 onwards, we will ship all esiRNAs ordered in tubes (at 20 or 50 µg scales) as a dried product at room temperature. For a complete resuspension guide please refer to the following protocol:
Cell lines have different properties and are sensitive or insensitive to different manipulations. This is certainly also true for transfections. Therefore, for every cell line an appropriate transfection protocol has to be established. The goal of transfection optimization is to achieve maximal transfection efficiency with minimal toxicity/cellular stress. Please note that the transfection conditions of chemically-derived siRNAs and esiRNAs may not be identical. However, known siRNA conditions can be used as a starting point for the optimization of esiRNA transfections.
Here, we provide the esiRNA transfection conditions as they were optimized in our laboratory for some commonly used cell lines. The values provided should only serve as guidelines and a detailed optimization should be carried out if other plate formats are used. We recommend using an esiRNA for Eg5 (Kif11) and Renilla luciferase (RLUC) as positive and negative controls, respectively, for optimization. Eg5 (Kif11) induces a mitotic arrest with the formation of typically round-shaped cells that will become apoptotic some hours after arrest. These round shaped cells can easily be observed in a standard bright-field cell-culture microscope. The conditions, which induce the maximum number of round-shaped cells after Eg5 transfection with minimum of toxicity after RLUC transfection, are optimal for your transfections.
Cell line | Origin | Plate format | Amount esiRNA [ng] | Transfection reagent |
---|---|---|---|---|
R1/E | 129Sv mouse ES | 96-well | 50 | Lipofectamine 2000 |
E14Tg2a | 129Sv mouse ES | 384-well | 20 | Lipofectamine 2000 |
E14Tg2a | 129Sv mouse ES | 96-well | 50 | Lipofectamine 2000 |
E14Tg2a | 129Sv mouse ES | 6-well | 500 | Lipofectamine 2000 |
E14Tg2a | 129Sv mouse ES | 10-cm dish | 7500 | Lipofectamine 2000 |
SW48 | Human colorectal carcinoma | 96-well | 40 | Oligofectamine |
DLD-1 | Human colorectal carcinoma | 96-well | 50 | Lipofectamine 2000 |
HCT116 | Human colorectal carcinoma | 96-well | 50 | Oligofectamine |
HCT116 | Human colorectal carcinoma | 6-well | 1200 | Oligofectamine |
RKO | Human colorectal carcinoma | 96-well | 50 | Oligofectamine |
HeLa | Human cervical carcinoma | 384-well | 15 | Oligofectamine |
HeLa | Human cervical carcinoma | 96-well | 30 | Oligofectamine |
HeLa | Human cervical carcinoma | 6-well | 1000 | Oligofectamine |
U2OS | Human osteosarcoma | 384-well | 60 | Oligofectamine, Effectene |
U2OS | Human osteosarcoma | 96-well | 30 | Oligofectamine, Effectene |
NIH3T3 | Immortalized mouse embryonic fibroblasts | 384-well | 50 | Lipofectamine, RNAiMAX |
NIH3T3 | Immortalized mouse embryonic fibroblasts | 96-well | 200 | Lipofectamine, RNAiMAX |
NIH3T3 | Immortalized mouse embryonic fibroblasts | 12-well | 1600 | Lipofectamine, RNAiMAX |
HEK293 | Human embryonic kidney | 384-well | 25 | Effectene |